species:   Clros
pid:       PID2227
parent:    cro-mir-21
paralog:   
locus:     CADEHS020000004.2:1849985-1850028
matures:   ['UCUUCGGCGUCUUGGCUGU', 'GGUCGCAAGAUUUUCGAGGCCA']
srr:       ERR5960111
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960111.cram CADEHS020000004.2:1849985-1850028

17 out of bounds
15 alignments
14 proper strand
14 stranded perfect matches

********************** *********************
GGUCGCAAGAUUUUCGAGGCCAACUUCUUCGGCGUCUUGGCUGU
(((..((((((..((((((.......)))))).)))))))))..
-------------------------UCUUCGGCGUCUUGGCUGU l=19 a=6 c
GGUCGCAAGAUUUUCGAGGCCA---------------------- l=22 a=0 c*
-------------------------UCUUCGGCGUCUUGGCUGU l=19 a=6 ma
GGUCGCAAGAUUUUCGAGGCCA---------------------- l=22 a=0 ma*

-----------------------------CGGCGUCUUGGCUGU l=15 a=1 
----------------------------UCGGCGUCUUGGCU-- l=14 a=3 
----------------------------UCGGCGUCUUGGCUG- l=15 a=1 
----------------------------UCGGCGUCUUGGCUGU l=16 a=1 
---------------------------UUCGGCGUCUUGGC--- l=14 a=1 
---------------------------UUCGGCGUCUUGGCU-- l=15 a=1 
-------------------------UCUUCGGCGUCUUGGCUGU l=19 a=6 (c,ma)

mb-01011
ax-1001001
ku-01
ss-101011101100
fn-111
